Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LUAD | rs74392835 | chr7:158821228 | G/A | 2.7E-5 | 494 | 22.25 | 20.33 | 6.43 | KM Plot |
| LUAD | rs74830554 | chr17:47431950 | G/A | 5.17E-11 | 503 | 21.92 | 18 | 4.55 | KM Plot |
| LUAD | rs74936625 | chr17:45836066 | C/T | 1.02E-6 | 504 | 21.87 | 21.4 | 3.97 | KM Plot |
| LUAD | rs75092916 | chr17:47412578 | T/C | 4.94E-11 | 504 | 21.93 | 18 | 4.55 | KM Plot |
| LUAD | rs75638049 | chr1:205620986 | C/T | 6.36E-7 | 500 | 21.93 | 21.73 | 1.93 | KM Plot |
| LUAD | rs7570388 | chr2:218014596 | G/T | 3.73E-8 | 499 | 21.88 | 20.87 | 8.8 | KM Plot |
| LUAD | rs75904857 | chr17:47370449 | T/G | 4.8E-11 | 501 | 21.92 | 20.3 | 4.55 | KM Plot |
| LUAD | rs7604329 | chr2:132255717 | G/A | 5.14E-6 | 498 | 21.72 | 24.27 | 11.33 | KM Plot |
| LUAD | rs76049479 | chr7:158846439 | A/G | 5.68E-10 | 483 | 22.98 | 20.17 | 4.95 | KM Plot |
| LUAD | rs76232486 | chr10:132106840 | G/A | 0 | 496 | 21.82 | 20.87 | 1.93 | KM Plot |
| LUAD | rs76366926 | chr17:47396628 | T/C | 5.65E-11 | 502 | 21.93 | 20.3 | 4.55 | KM Plot |
| LUAD | rs76806249 | chr11:62616561 | C/T | 1.84E-5 | 505 | 21.93 | 21.75 | 7.7 | KM Plot |
| LUAD | rs77050989 | chr17:45848727 | G/T | 1.02E-6 | 504 | 21.87 | 21.4 | 3.97 | KM Plot |
| LUAD | rs77130079 | chr7:158842317 | C/A | 6.97E-10 | 482 | 22.87 | 19.95 | 4.95 | KM Plot |
| LUAD | rs77247327 | chr17:47411493 | T/C | 5.23E-11 | 503 | 21.93 | 19.15 | 4.55 | KM Plot |